PH01003039G0010's details annotation
1.Annotation
ICBR annotation: cycloartenol-C-24-methyltransferase 1, putative, expressed
Blast result AT5G13710 : 5.00E-165
Blast annotation: sterol methyltransferase 1
2.Location
Scaffold: PH01003039
Strand: +
| Region | Start | End |
| gene | 2431 | 8781 |
| mRNA | 2431 | 8781 |
| exon | 2431 | 3020 |
| exon | 3976 | 4042 |
| exon | 4359 | 4432 |
| exon | 4599 | 4683 |
| exon | 4799 | 4854 |
| exon | 5384 | 5438 |
| exon | 5588 | 5635 |
| exon | 6056 | 6139 |
| exon | 6235 | 6435 |
| exon | 6591 | 6716 |
| exon | 7561 | 7658 |
| exon | 7769 | 7823 |
| exon | 7853 | 7921 |
| exon | 8003 | 8781 |
| CDS | 2938 | 3020 |
| CDS | 3976 | 4042 |
| CDS | 4359 | 4432 |
| CDS | 4599 | 4683 |
| CDS | 4799 | 4854 |
| CDS | 5384 | 5438 |
| CDS | 5588 | 5635 |
| CDS | 6056 | 6139 |
| CDS | 6235 | 6435 |
| CDS | 6591 | 6716 |
| CDS | 7561 | 7658 |
| CDS | 7769 | 7823 |
| CDS | 7853 | 7921 |
| CDS | 8003 | 8008 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM000724 | HSF Transcription_Regulator(from PlantTFDB) metabolic process, sterol_24-C-methyltransferase_activity Steroid_biosynthesis protein kinase C-activating G-protein coupled receptor signaling pathway, steroid biosynthetic process, diacylglycerol kinase activity, NAD+ kinase activity, |
| coexpression network | CFinderM001591 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation metabolic process, branched chain family amino acid metabolic process, endodeoxyribonuclease activity, producing 5'-phosphomonoesters, sterol_24-C-methyltransferase_activity branched-chain-amino-acid transaminase activity, transferase activity, transferring pentosyl groups, steroid biosynthetic process, histidine biosynthetic process, HB-other Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) Pantothenate_and_CoA_biosynthesis Histidine_metabolism Steroid_biosynthesis |
| coexpression network | CFinderM001682 | RLK-Pelle_WAK_LRK10L-1 (from iTAK) Steroid_biosynthesis sterol_24-C-methyltransferase_activity steroid biosynthetic process, single-stranded DNA binding, |
| coexpression network | CFinderM001683 | Steroid_biosynthesis RLK-Pelle_WAK_LRK10L-1 (from iTAK) TKL-Pl-6 (from iTAK) sterol_24-C-methyltransferase_activity protein serine/threonine kinase activity, protein phosphorylation, steroid biosynthetic process, single-stranded DNA binding, protein kinase activity, transferase activity, transferring phosphorus-containing groups, TKL-Pl-4 (from iTAK) GARP-G2-like Transcription_Regulator(from iTAK) G2-like Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001698 | Steroid_biosynthesis endodeoxyribonuclease activity, producing 5'-phosphomonoesters, sterol_24-C-methyltransferase_activity single-stranded DNA binding, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, WRKY Transcription_Regulator(from PlantTFDB) dephosphorylation, steroid biosynthetic process, |
| coexpression network | CFinderM001699 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation HB-other Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) sterol_24-C-methyltransferase_activity 5S rRNA binding, endodeoxyribonuclease activity, producing 5'-phosphomonoesters, branched-chain-amino-acid transaminase activity, Pantothenate_and_CoA_biosynthesis Steroid_biosynthesis steroid biosynthetic process, branched chain family amino acid metabolic process, ion transport, |
| coexpression network | CFinderM001871 | Steroid_biosynthesis steroid biosynthetic process, sterol_24-C-methyltransferase_activity |
| coexpression network | CFinderM001886 | Steroid_biosynthesis ubiquitin ligase complex, sterol_24-C-methyltransferase_activity dephosphorylation, steroid biosynthetic process, mRNA_surveillance_pathway protein ubiquitination, protein dephosphorylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08241.11 | Methyltransf_11 | 105 | 201 |
| PF08498.9 | Sterol_MT_C | 277 | 342 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Steroid biosynthesis | sterol 24-C-methyltransferase [EC:2.1.1.41] | ko00100 | K00559 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003838 | sterol 24-C-methyltransferase activity |
| GO:0006694 | steroid biosynthetic process |
| GO:0008152 | metabolic process |
| GO:0008168 | methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.