PH01000721G0360's details annotation
1.Annotation
ICBR annotation: DIRP family protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000721
Strand: +
| Region | Start | End |
| gene | 204234 | 208845 |
| mRNA | 204234 | 208845 |
| exon | 204234 | 204434 |
| exon | 204577 | 204672 |
| exon | 204768 | 204830 |
| exon | 205132 | 205209 |
| exon | 205725 | 206436 |
| exon | 208372 | 208449 |
| exon | 208559 | 208845 |
| CDS | 204327 | 204434 |
| CDS | 204577 | 204672 |
| CDS | 204768 | 204830 |
| CDS | 205132 | 205209 |
| CDS | 205725 | 206436 |
| CDS | 208372 | 208449 |
| CDS | 208559 | 208728 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 46 | 81 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.