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1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | phenylalanyl-tRNA aminoacylation, | 0.013612287 | GO:0006432 | | microtubule, | 0.018702882 | GO:0005874 | | mitochondrial outer membrane, | 0.018702882 | GO:0005741 | | protein complex, | 0.018702882 | GO:0043234 | | Fatty_acid_metabolism | 0.0263178 | KEGG | | Peroxisome | 0.0263178 | KEGG | | Aminoacyl-tRNA_biosynthesis | 0.0263178 | KEGG | | phenylalanine-tRNA ligase activity, | 0.027928459 | GO:0004826 | | tRNA aminoacylation, | 0.030551157 | GO:0043039 | | protein polymerization, | 0.030551157 | GO:0051258 | | microtubule-based process, | 0.030551157 | GO:0007017 | | tRNA binding, | 0.041866506 | GO:0000049 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000006G2790 | tRNA synthetase beta subunit family protein | AT1G72550 (0.00E+00) | | PH01000430G0870 | translocase of the outer mitochondrial membrane 40 | AT3G20000 (1.00E-109) | | PH01001222G0200 | long chain acyl-CoA synthetase 9 | AT1G77590 (0.00E+00) | | PH01002546G0060 | gamma-tubulin complex protein 2 | AT5G05620 (0.00E+00) | | PH01002889G0070 | auxin signaling F-box 2 | AT3G26810 (0.00E+00) | | PH01002925G0140 | microtubule end binding protein EB1A | AT3G47690 (1.10E-91) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000139 | metabolic process,
transferase activity, transferring hexosyl groups,
cysteine metabolic process,
phenylalanyl-tRNA aminoacylation,
cysteine desulfurase activity,
phenylalanine-tRNA ligase activity,
| details | | CFinderM000331 | | details | | CFinderM000521 | protein complex,
microtubule,
cytokinesis
microtubule cytoskeleton organization,
protein polymerization,
microtubule-based process,
AGC_RSK-2 (from iTAK)
| details | | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
| details | | CFinderM000747 | microtubule,
protein complex,
microtubule-based process,
protein polymerization,
| details | | CFinderM000835 | phenylalanyl-tRNA aminoacylation,
aminoacyl-tRNA ligase activity,
phenylalanine-tRNA ligase activity,
tRNA binding,
tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
nucleotide binding,
magnesium ion binding,
cytoplasm,
GeBP Transcription_Regulator(from PlantTFDB)
RNA binding,
tRNA aminoacylation for protein translation,
ATP binding,
| details | | CFinderM000848 | GT66 GlycosylTransferases
phenylalanyl-tRNA aminoacylation,
tRNA aminoacylation,
oligosaccharyl transferase activity,
phenylalanine-tRNA ligase activity,
tRNA binding,
protein glycosylation,
Various_types_of_N-glycan_biosynthesis
Aminoacyl-tRNA_biosynthesis
N-Glycan_biosynthesis
| details | | CFinderM000868 | proteasome_regulatory_particle
Peroxisome
Proteasome
Fatty_acid_metabolism
| details | | CFinderM000941 | defense_response_signaling_pathway,_resistance_gene-dependent
phenylalanyl-tRNA aminoacylation,
defense response to bacterium,
tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
phenylalanine-tRNA ligase activity,
tRNA binding,
| details | | CFinderM001220 | vesicle docking involved in exocytosis,
Peroxisome
Fatty_acid_metabolism
| details | | CFinderM001321 | GT66 GlycosylTransferases
peroxisome_fission
phenylalanyl-tRNA aminoacylation,
integral_component_of_peroxisomal_membrane
SAGA-type_complex
tRNA aminoacylation,
oligosaccharyl transferase activity,
phenylalanine-tRNA ligase activity,
| details | | CFinderM001491 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
glucose-6-phosphate isomerase activity,
sterol_24-C-methyltransferase_activity
GTP cyclohydrolase II activity,
riboflavin biosynthetic process,
steroid biosynthetic process,
gluconeogenesis,
isoprenoid biosynthetic process,
| details | | CFinderM001560 | HB-KNOX Transcription_Regulator(from iTAK)
GT48 GlycosylTransferases
| details | | CFinderM001647 | phenylalanyl-tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
tRNA binding,
tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
aminoacyl-tRNA ligase activity,
fumarate metabolic process,
nucleotide binding,
magnesium ion binding,
tricarboxylic acid cycle enzyme complex,
fumarate hydratase activity,
cytoplasm,
mitochondrial outer membrane,
RNA binding,
tricarboxylic acid cycle,
Carbon_fixation_pathways_in_prokaryotes
Citrate_cycle_(TCA_cycle)
lyase activity,
| details | | CFinderM001684 | heme_a_biosynthetic_process
peroxisomal membrane,
mitochondrial outer membrane,
protein_import_into_peroxisome_matrix
negative_regulation_of_transcription,_DNA-templated
transcription_corepressor_activity
| details | | CFinderM001774 | regulation of Rab GTPase activity,
Rab GTPase activator activity,
intracellular,
DNA metabolic process,
isoprenoid biosynthetic process,
nuclease activity,
Nucleotide_excision_repair
Terpenoid_backbone_biosynthesis
| details | | CFinderM001860 | Various_types_of_N-glycan_biosynthesis
N-Glycan_biosynthesis
Protein_processing_in_endoplasmic_reticulum
dolichyl-diphosphooligosaccharide-protein glycotransferase activity,
GT66 GlycosylTransferases
protein glycosylation,
protein N-linked glycosylation via asparagine,
phenylalanyl-tRNA aminoacylation,
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
oligosaccharyl transferase activity,
tRNA binding,
ER_membrane_protein_complex
Aminoacyl-tRNA_biosynthesis
endoplasmic reticulum membrane,
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides,
| details | | CFinderM001872 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
GTP cyclohydrolase II activity,
Riboflavin_metabolism
riboflavin biosynthetic process,
isoprenoid biosynthetic process,
nucleic acid binding,
Terpenoid_backbone_biosynthesis
| details | | CFinderM001895 | phenylalanyl-tRNA aminoacylation,
mitochondrial outer membrane,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
tRNA binding,
| details |
4.Expression profilings |
