Annotation of co-expression genes

PH01002925G0140's details annotation

1.Annotation

ICBR annotation: ATEB1A-like microtubule associated protein, putative, expressed

Blast result AT3G47690 : 1.10E-91
Blast annotation: microtubule end binding protein EB1A

2.Location

Scaffold: PH01002925
Strand: -

RegionStartEnd
gene118315122233
mRNA118315122233
exon118315118932
exon119423119536
exon119815119891
exon120156120277
exon120363120469
exon121204121290
exon121391121459
exon121652122233
CDS118816118932
CDS119423119536
CDS119815119891
CDS120156120277
CDS120363120469
CDS121204121290
CDS121391121459
CDS121652121762

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001696phenylalanyl-tRNA aminoacylation,
microtubule,
mitochondrial outer membrane,
protein complex,
Fatty_acid_metabolism
Peroxisome
Aminoacyl-tRNA_biosynthesis
phenylalanine-tRNA ligase activity,
tRNA aminoacylation,
protein polymerization,
microtubule-based process,
tRNA binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00307.30CH18115
PF03271.16EB1203240

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008017microtubule binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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