|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | regulation of Rab GTPase activity, | 7.98E-05 | GO:0032313 | | Rab GTPase activator activity, | 0.000153445 | GO:0005097 | | intracellular, | 0.007318302 | GO:0005622 | | DNA metabolic process, | 0.013896658 | GO:0006259 | | isoprenoid biosynthetic process, | 0.014394469 | GO:0008299 | | nuclease activity, | 0.015605232 | GO:0004518 | | Nucleotide_excision_repair | 0.018194041 | KEGG | | Terpenoid_backbone_biosynthesis | 0.018194041 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000021G2480 | Single-stranded nucleic acid binding R3H protein | AT2G40960 (2.30E-58) | | PH01000297G0240 | farnesyl diphosphate synthase 1 | AT5G47770 (4.00E-139) | | PH01002889G0070 | auxin signaling F-box 2 | AT3G26810 (0.00E+00) | | PH01004857G0110 | Ypt/Rab-GAP domain of gyp1p superfamily protein | AT3G55020 (2.00E-145) | | PH01004857G0140 | Ypt/Rab-GAP domain of gyp1p superfamily protein | AT2G39280 (1.80E-36) | | PH01006328G0050 | Restriction endonuclease, type II-like superfamily protein | AT5G41150 (0.00E+00) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
| details | | CFinderM001285 | PcG_protein_complex
cation:chloride_symporter_activity
SET Transcription_Regulator(from iTAK)
cytoskeleton,
ion transport,
| details | | CFinderM001491 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
glucose-6-phosphate isomerase activity,
sterol_24-C-methyltransferase_activity
GTP cyclohydrolase II activity,
riboflavin biosynthetic process,
steroid biosynthetic process,
gluconeogenesis,
isoprenoid biosynthetic process,
| details | | CFinderM001503 | methyltransferase activity,
DNA metabolic process,
nuclease activity,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
cell redox homeostasis,
Nucleotide_excision_repair
| details | | CFinderM001504 | Amino_sugar_and_nucleotide_sugar_metabolism
GT8 GlycosylTransferases
DNA metabolic process,
cellular metabolic process,
Nucleotide_excision_repair
Starch_and_sucrose_metabolism
| details | | CFinderM001604 | GT31 GlycosylTransferases
Nucleotide_excision_repair
guanyl nucleotide binding,
G-protein_beta/gamma-subunit_complex_binding
DNA metabolic process,
G-protein coupled receptor signaling pathway,
nuclease activity,
endoplasmic reticulum,
| details | | CFinderM001696 | phenylalanyl-tRNA aminoacylation,
microtubule,
mitochondrial outer membrane,
protein complex,
Fatty_acid_metabolism
Peroxisome
Aminoacyl-tRNA_biosynthesis
phenylalanine-tRNA ligase activity,
tRNA aminoacylation,
protein polymerization,
microtubule-based process,
tRNA binding,
| details | | CFinderM001768 | regulation of Rab GTPase activity,
Rab GTPase activator activity,
intracellular,
Nucleotide_excision_repair
G-protein coupled receptor signaling pathway,
DNA metabolic process,
guanyl nucleotide binding,
G-protein_beta/gamma-subunit_complex_binding
nuclease activity,
| details | | CFinderM001771 | Terpenoid_backbone_biosynthesis
isoprenoid biosynthetic process,
regulation of Rab GTPase activity,
Rab GTPase activator activity,
acid-amino acid ligase activity,
| details | | CFinderM001872 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
GTP cyclohydrolase II activity,
Riboflavin_metabolism
riboflavin biosynthetic process,
isoprenoid biosynthetic process,
nucleic acid binding,
Terpenoid_backbone_biosynthesis
| details | | CFinderM001895 | phenylalanyl-tRNA aminoacylation,
mitochondrial outer membrane,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
tRNA binding,
| details |
4.Expression profilings |
