PH01002889G0070's details annotation
1.Annotation
ICBR annotation: OsFBL55 - F-box domain and LRR containing protein, expressed
Blast result AT3G26810 : 0.00E+00
Blast annotation: auxin signaling F-box 2
2.Location
Scaffold: PH01002889
Strand: +
| Region | Start | End |
| gene | 41053 | 48213 |
| mRNA | 41053 | 48213 |
| exon | 41053 | 42759 |
| exon | 44933 | 45425 |
| exon | 46497 | 48213 |
| CDS | 42308 | 42759 |
| CDS | 44933 | 45425 |
| CDS | 46497 | 47276 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM001491 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, glucose-6-phosphate isomerase activity, sterol_24-C-methyltransferase_activity GTP cyclohydrolase II activity, riboflavin biosynthetic process, steroid biosynthetic process, gluconeogenesis, isoprenoid biosynthetic process, |
| coexpression network | CFinderM001696 | phenylalanyl-tRNA aminoacylation, microtubule, mitochondrial outer membrane, protein complex, Fatty_acid_metabolism Peroxisome Aminoacyl-tRNA_biosynthesis phenylalanine-tRNA ligase activity, tRNA aminoacylation, protein polymerization, microtubule-based process, tRNA binding, |
| coexpression network | CFinderM001774 | regulation of Rab GTPase activity, Rab GTPase activator activity, intracellular, DNA metabolic process, isoprenoid biosynthetic process, nuclease activity, Nucleotide_excision_repair Terpenoid_backbone_biosynthesis |
| coexpression network | CFinderM001872 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity, Riboflavin_metabolism riboflavin biosynthetic process, isoprenoid biosynthetic process, nucleic acid binding, Terpenoid_backbone_biosynthesis |
| coexpression network | CFinderM001895 | phenylalanyl-tRNA aminoacylation, mitochondrial outer membrane, Aminoacyl-tRNA_biosynthesis tRNA aminoacylation, phenylalanine-tRNA ligase activity, tRNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.