Gene details

Annotation of co-expression genes

PH01001711G0360's details annotation

1.Annotation

ICBR annotation: RING finger protein, putative, expressed

Blast result AT5G64920 : 4.20E-28
Blast annotation: COP1-interacting protein 8

2.Location

Scaffold: PH01001711
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	details
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000885	SNF2 Transcription_Regulator(from iTAK) valyl-tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis valine-tRNA ligase activity, protein binding, aminoacyl-tRNA_editing_activity mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, tRNA aminoacylation for protein translation, cellulose biosynthetic process,
coexpression network	CFinderM001252	SET Transcription_Regulator(from iTAK) eukaryotic translation initiation factor 3 complex, RNA_transport protein binding,
coexpression network	CFinderM001659	protein import into nucleus, nuclear pore,
coexpression network	CFinderM001661	RNA_transport RNA metabolic process,
coexpression network	CFinderM001779	pseudouridine synthesis, RNA modification, RNA binding, binding, pseudouridine synthase activity,
coexpression network	CFinderM001855	Base_excision_repair GPI anchor metabolic process, DNA recombination,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF13639.5	zf-RING_2	201	243

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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