|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | GPI anchor metabolic process, | 0.006186436 | GO:0006505 | | Base_excision_repair | 0.008224126 | KEGG | | nuclease activity, | 0.031210464 | GO:0004518 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000032G2590 | apurinic endonuclease-redox protein | AT2G41460 (1.70E-56) | | PH01000038G1400 | alpha/beta-Hydrolases superfamily protein | AT4G34310 (0.00E+00) | | PH01000231G1040 | DNAse I-like superfamily protein | AT5G11350 (6.90E-76) | | PH01000464G0270 | Lung seven transmembrane receptor family protein | AT5G18520 (6.00E-141) | | PH01001046G0420 | myosin heavy chain-related | AT2G34730 (1.40E-49) | | PH01003376G0110 | Bax inhibitor-1 family protein | AT4G15470 (5.10E-83) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000671 | SET Transcription_Regulator(from iTAK)
DNA repair,
Base_excision_repair
nuclease activity,
Ubiquitin_mediated_proteolysis
| details | | CFinderM000781 | spliceosomal complex,
GPI anchor metabolic process,
mitosis,
Spliceosome
| details | | CFinderM000904 | IWS1 Transcription_Regulator(from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Steroid_biosynthesis
GPI anchor metabolic process,
| details | | CFinderM001146 | TKL-Pl-2 (from iTAK)
chromosome,
Homologous_recombination
DNA topological change,
DNA topoisomerase activity,
DNA topoisomerase type I activity,
| details | | CFinderM001204 | Mre11 complex,
nucleolus,
DNA repair,
| details | | CFinderM001429 | negative_regulation_of_transcription,_DNA-templated
FMN binding,
| details | | CFinderM001473 | GPI anchor metabolic process,
DNA recombination,
RNA_degradation
| details | | CFinderM001559 | GT22 GlycosylTransferases
intrinsic to endoplasmic reticulum membrane,
GPI anchor metabolic process,
GPI anchor biosynthetic process,
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
| details | | CFinderM001636 | GPI anchor metabolic process,
double-strand break repair,
protein folding,
nucleus,
DNA metabolic process,
exonuclease activity,
endonuclease activity,
phosphoprotein phosphatase activity,
manganese ion binding,
peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM001669 | CBM49 Carbohydrate-Binding_Modules
GH9 Glycoside_Hydrolases
phosphatidylinositol_dephosphorylation
| details | | CFinderM001730 | Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-2 (from iTAK)
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
clathrin_coat_assembly
Pyrimidine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001807 | GT31 GlycosylTransferases
SNF2 Transcription_Regulator(from iTAK)
| details | | CFinderM001839 | GPI anchor metabolic process,
DNA methylation,
DNA recombination,
Base_excision_repair
Ubiquitin_mediated_proteolysis
| details | | CFinderM001855 | Base_excision_repair
GPI anchor metabolic process,
DNA recombination,
| details | | CFinderM001861 | SNARE_interactions_in_vesicular_transport
acid-amino acid ligase activity,
Ubiquitin_mediated_proteolysis
mRNA_surveillance_pathway
| details | | CFinderM001869 | DNA recombination,
(1->3)-beta-D-glucan biosynthetic process,
1,3-beta-D-glucan synthase complex,
Ubiquitin_mediated_proteolysis
| details | | CFinderM001888 | Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
phospholipid binding,
Pyrimidine_metabolism
cell redox homeostasis,
| details | | CFinderM001890 | clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
RNA_degradation
regulation of transcription, DNA-dependent,
phospholipid binding,
| details |
4.Expression profilings |
