PH01000231G1040's details annotation
1.Annotation
ICBR annotation: endonuclease/exonuclease/phosphatase family domain containing protein, expressed
Blast result AT5G11350 : 6.90E-76
Blast annotation: DNAse I-like superfamily protein
2.Location
Scaffold: PH01000231
Strand: -
| Region | Start | End |
| gene | 760907 | 766916 |
| mRNA | 760907 | 766916 |
| exon | 760907 | 761054 |
| exon | 761174 | 761258 |
| exon | 761358 | 761443 |
| exon | 761691 | 762951 |
| exon | 763073 | 763161 |
| exon | 763408 | 763500 |
| exon | 764199 | 764286 |
| exon | 764759 | 764808 |
| exon | 764922 | 765003 |
| exon | 765171 | 765223 |
| exon | 765945 | 766010 |
| exon | 766287 | 766472 |
| exon | 766620 | 766916 |
| CDS | 761001 | 761054 |
| CDS | 761174 | 761258 |
| CDS | 761358 | 761443 |
| CDS | 761691 | 762951 |
| CDS | 763073 | 763161 |
| CDS | 763408 | 763500 |
| CDS | 764199 | 764286 |
| CDS | 764759 | 764808 |
| CDS | 764922 | 765003 |
| CDS | 765171 | 765223 |
| CDS | 765945 | 766010 |
| CDS | 766287 | 766472 |
| CDS | 766620 | 766646 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001730 | Alanine,_aspartate_and_glutamate_metabolism TKL-Pl-2 (from iTAK) carbamoyl_phosphate_biosynthetic_process glutamine_catabolic_process clathrin_coat clathrin_coat_assembly Pyrimidine_metabolism bZIP Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001856 | GPI anchor metabolic process, Base_excision_repair nuclease activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03372.22 | Exo_endo_phos | 23 | 215 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.