PH01000032G2590's details annotation
1.Annotation
ICBR annotation: apurinic endonuclease-redox protein, putative, expressed
Blast result AT2G41460 : 1.70E-56
Blast annotation: apurinic endonuclease-redox protein
2.Location
Scaffold: PH01000032
Strand: +
| Region | Start | End |
| gene | 1523552 | 1528814 |
| mRNA | 1523552 | 1528814 |
| exon | 1523552 | 1524540 |
| exon | 1524793 | 1524949 |
| exon | 1525036 | 1525133 |
| exon | 1525224 | 1525303 |
| exon | 1525598 | 1525834 |
| exon | 1525927 | 1526039 |
| exon | 1526338 | 1526469 |
| exon | 1527302 | 1527439 |
| exon | 1528305 | 1528385 |
| exon | 1528495 | 1528814 |
| CDS | 1524476 | 1524540 |
| CDS | 1524793 | 1524949 |
| CDS | 1525036 | 1525133 |
| CDS | 1525224 | 1525303 |
| CDS | 1525598 | 1525834 |
| CDS | 1525927 | 1526039 |
| CDS | 1526338 | 1526469 |
| CDS | 1527302 | 1527439 |
| CDS | 1528305 | 1528385 |
| CDS | 1528495 | 1528608 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000671 | SET Transcription_Regulator(from iTAK) DNA repair, Base_excision_repair nuclease activity, Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM001839 | GPI anchor metabolic process, DNA methylation, DNA recombination, Base_excision_repair Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM001855 | Base_excision_repair GPI anchor metabolic process, DNA recombination, |
| coexpression network | CFinderM001856 | GPI anchor metabolic process, Base_excision_repair nuclease activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02037.26 | SAP | 94 | 126 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Base excision repair | exodeoxyribonuclease III [EC:3.1.11.2] | ko03410 | K01142 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004518 | nuclease activity |
| GO:0006281 | DNA repair |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.