PH01000215G0080's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000215
Strand: -
| Region | Start | End |
| gene | 43554 | 64379 |
| mRNA | 43554 | 64379 |
| exon | 43554 | 44484 |
| exon | 47671 | 47788 |
| exon | 48432 | 48457 |
| exon | 48766 | 48837 |
| exon | 49339 | 49419 |
| exon | 50243 | 51226 |
| exon | 51797 | 51877 |
| exon | 52303 | 52376 |
| exon | 52510 | 54055 |
| exon | 54537 | 55977 |
| exon | 56443 | 56672 |
| exon | 56765 | 56860 |
| exon | 58215 | 58325 |
| exon | 58529 | 58666 |
| exon | 59877 | 59972 |
| exon | 62248 | 62295 |
| exon | 62696 | 62790 |
| exon | 63245 | 63323 |
| exon | 64060 | 64379 |
| CDS | 44077 | 44484 |
| CDS | 47671 | 47788 |
| CDS | 48432 | 48457 |
| CDS | 48766 | 48837 |
| CDS | 49339 | 49419 |
| CDS | 50243 | 51226 |
| CDS | 51797 | 51877 |
| CDS | 52303 | 52376 |
| CDS | 52510 | 54055 |
| CDS | 54537 | 55977 |
| CDS | 56443 | 56672 |
| CDS | 56765 | 56860 |
| CDS | 58215 | 58325 |
| CDS | 58529 | 58666 |
| CDS | 59877 | 59972 |
| CDS | 62248 | 62295 |
| CDS | 62696 | 62790 |
| CDS | 63245 | 63323 |
| CDS | 64060 | 64062 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000233 | |
| coexpression network | CFinderM000513 | serine-type endopeptidase inhibitor activity, extracellular region, |
| coexpression network | CFinderM000854 | |
| coexpression network | CFinderM000862 | DBP Transcription_Regulator(from iTAK) Golgi stack, GPI-anchor transamidase complex, |
| coexpression network | CFinderM001077 | SNARE_interactions_in_vesicular_transport |
| coexpression network | CFinderM001146 | TKL-Pl-2 (from iTAK) chromosome, Homologous_recombination DNA topological change, DNA topoisomerase activity, DNA topoisomerase type I activity, |
| coexpression network | CFinderM001659 | protein import into nucleus, nuclear pore, |
| coexpression network | CFinderM001660 | SNARE_interactions_in_vesicular_transport |
| coexpression network | CFinderM001787 | protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, cellular protein modification process, binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.