|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | STE_STE7 (from iTAK) | 0.004366873 | GFam | | nucleotide-sugar transport, | 0.0447938 | GO:0015780 | | S-adenosylmethionine_biosynthetic_process | 0.0447938 | GO:0006556 | | carbohydrate transport, | 0.046888735 | GO:0008643 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000010G1470 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | AT2G26200 (6.00E-154) | | PH01000015G0650 | Octicosapeptide/Phox/Bem1p family protein | AT2G01190 (1.00E-67) | | PH01000015G1320 | AAA-type ATPase family protein | AT2G27600 (1.00E-117) | | PH01000031G0500 | carboxyesterase 16 | AT5G14310 (2.00E-153) | | PH01000138G1440 | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related | AT2G25430 (0.00E+00) | | PH01000203G0670 | Serinc-domain containing serine and sphingolipid biosynthesis protein | AT1G16180 (2.00E-119) | | PH01000207G0080 | S-adenosylmethionine synthetase 2 | AT4G01850 (0) | | PH01000286G0030 | MAP kinase kinase 5 | AT3G21220 (1.00E-111) | | PH01000530G0690 | regulatory particle non-ATPase 13 | AT2G26590 (2.00E-100) | | PH01001249G0550 | delta-adaptin | AT1G48760 (1.00E-155) | | PH01001437G0390 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT4G25120 (2.70E-37) | | PH01001613G0320 | Nucleotide-sugar transporter family protein | AT4G35335 (1.00E-147) | | PH01002896G0040 | RNA polymerase III subunit RPC82 family protein | AT3G49000 (7.30E-33) | | PH01006576G0030 | fucosyltransferase 13 | AT1G71990 (1.50E-42) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000615 | cellular protein metabolic process,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
protein methylation,
protein refolding,
RNA_degradation
| details | | CFinderM000658 | NAC Transcription_Regulator(from PlantTFDB)
heme oxidation,
heme oxygenase (decyclizing) activity,
hydrogen-translocating pyrophosphatase activity,
proton transport,
| details | | CFinderM001092 | CBM20 Carbohydrate-Binding_Modules
GH77 Glycoside_Hydrolases
membrane coat,
4-alpha-glucanotransferase activity,
starch_binding
| details | | CFinderM001302 | membrane coat,
malic enzyme activity,
malate_dehydrogenase_(decarboxylating)_(NAD+)_activity
malate metabolic process,
| details | | CFinderM001429 | negative_regulation_of_transcription,_DNA-templated
FMN binding,
| details | | CFinderM001515 | protein insertion into membrane,
transcription, DNA-dependent,
exonuclease activity,
| details | | CFinderM001585 | bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001624 | nuclear pore,
ribonucleoside_binding
NAC Transcription_Regulator(from PlantTFDB)
1,3-beta-D-glucan synthase activity,
DNA-directed RNA polymerase activity,
| details | | CFinderM001726 | methyltransferase activity,
fucosyltransferase_activity
DNA methylation,
protein methylation,
Various_types_of_N-glycan_biosynthesis
N-Glycan_biosynthesis
membrane,
protein glycosylation,
| details | | CFinderM001730 | Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-2 (from iTAK)
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
clathrin_coat_assembly
Pyrimidine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001733 | nucleotide-sugar transport,
carbohydrate transport,
nucleotide-sugar transmembrane transporter activity,
Golgi membrane,
sugar:hydrogen symporter activity,
metallopeptidase activity,
NAC Transcription_Regulator(from PlantTFDB)
metalloendopeptidase activity,
| details | | CFinderM001734 | NAC Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001746 | cellular amino acid metabolic process,
Glycine,_serine_and_threonine_metabolism
aminoacylase activity,
Lysine_biosynthesis
Arginine_and_proline_metabolism
Cysteine_and_methionine_metabolism
metallopeptidase activity,
| details | | CFinderM001780 | S-adenosylmethionine_biosynthetic_process
Cysteine_and_methionine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
methionine adenosyltransferase activity,
| details | | CFinderM001791 | valyl-tRNA aminoacylation,
eukaryotic translation initiation factor 3 complex,
cytoplasm,
aminoacyl-tRNA_editing_activity
valine-tRNA ligase activity,
Aminoacyl-tRNA_biosynthesis
NAC Transcription_Regulator(from PlantTFDB)
tRNA aminoacylation for protein translation,
| details | | CFinderM001871 | Steroid_biosynthesis
steroid biosynthetic process,
sterol_24-C-methyltransferase_activity
| details | | CFinderM001873 | GT47 GlycosylTransferases
| details | | CFinderM001888 | Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
phospholipid binding,
Pyrimidine_metabolism
cell redox homeostasis,
| details | | CFinderM001890 | clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
RNA_degradation
regulation of transcription, DNA-dependent,
phospholipid binding,
| details | | CFinderM001891 | Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
membrane coat,
clathrin_coat_assembly
bZIP Transcription_Regulator(from PlantTFDB)
RNA metabolic process,
| details |
4.Expression profilings |
