PH01000207G0080's details annotation
1.Annotation
ICBR annotation: S-adenosylmethionine synthetase, putative, expressed
Blast result AT4G01850 : 0
Blast annotation: S-adenosylmethionine synthetase 2
2.Location
Scaffold: PH01000207
Strand: +
| Region | Start | End |
| gene | 88028 | 91579 |
| mRNA | 88028 | 91579 |
| exon | 88028 | 91579 |
| CDS | 88889 | 90073 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001755 | STE_STE7 (from iTAK) nucleotide-sugar transport, S-adenosylmethionine_biosynthetic_process carbohydrate transport, |
| coexpression network | CFinderM001780 | S-adenosylmethionine_biosynthetic_process Cysteine_and_methionine_metabolism bZIP Transcription_Regulator(from PlantTFDB) methionine adenosyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00438.19 | S-AdoMet_synt_N | 6 | 103 |
| PF02772.15 | S-AdoMet_synt_M | 119 | 240 |
| PF02773.15 | S-AdoMet_synt_C | 242 | 382 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Cysteine and methionine metabolism | S-adenosylmethionine synthetase [EC:2.5.1.6] | ko00270 | K00789 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004478 | methionine adenosyltransferase activity |
| GO:0005524 | ATP binding |
| GO:0006556 | S-adenosylmethionine biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.