PH01000203G0670's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G16180 : 2.00E-119
Blast annotation: Serinc-domain containing serine and sphingolipid biosynthesis protein
2.Location
Scaffold: PH01000203
Strand: -
| Region | Start | End |
| gene | 550461 | 555059 |
| mRNA | 550461 | 555059 |
| exon | 550461 | 551102 |
| exon | 551187 | 551427 |
| exon | 551572 | 551746 |
| exon | 551808 | 551970 |
| exon | 552575 | 552627 |
| exon | 552673 | 552751 |
| exon | 553156 | 555059 |
| CDS | 550810 | 551102 |
| CDS | 551187 | 551427 |
| CDS | 551572 | 551746 |
| CDS | 551808 | 551970 |
| CDS | 552575 | 552627 |
| CDS | 552673 | 552751 |
| CDS | 553156 | 553288 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000615 | cellular protein metabolic process, RLK-Pelle_RLCK-VIIa-2 (from iTAK) protein methylation, protein refolding, RNA_degradation |
| coexpression network | CFinderM001585 | bZIP Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001624 | nuclear pore, ribonucleoside_binding NAC Transcription_Regulator(from PlantTFDB) 1,3-beta-D-glucan synthase activity, DNA-directed RNA polymerase activity, |
| coexpression network | CFinderM001746 | cellular amino acid metabolic process, Glycine,_serine_and_threonine_metabolism aminoacylase activity, Lysine_biosynthesis Arginine_and_proline_metabolism Cysteine_and_methionine_metabolism metallopeptidase activity, |
| coexpression network | CFinderM001755 | STE_STE7 (from iTAK) nucleotide-sugar transport, S-adenosylmethionine_biosynthetic_process carbohydrate transport, |
| coexpression network | CFinderM001791 | valyl-tRNA aminoacylation, eukaryotic translation initiation factor 3 complex, cytoplasm, aminoacyl-tRNA_editing_activity valine-tRNA ligase activity, Aminoacyl-tRNA_biosynthesis NAC Transcription_Regulator(from PlantTFDB) tRNA aminoacylation for protein translation, |
| coexpression network | CFinderM001871 | Steroid_biosynthesis steroid biosynthetic process, sterol_24-C-methyltransferase_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03348.14 | Serinc | 1 | 43 |
| PF03348.14 | Serinc | 89 | 377 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.