PH01001437G0390's details annotation
1.Annotation
ICBR annotation: uvrD/REP helicase family protein, putative, expressed
Blast result AT4G25120 : 2.70E-37
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01001437
Strand: +
| Region | Start | End |
| gene | 263997 | 269111 |
| mRNA | 263997 | 269111 |
| exon | 263997 | 264157 |
| exon | 265950 | 266021 |
| exon | 266075 | 266146 |
| exon | 266417 | 266473 |
| exon | 266726 | 266889 |
| exon | 267112 | 267205 |
| exon | 267534 | 267584 |
| exon | 267806 | 267868 |
| exon | 268131 | 269111 |
| CDS | 264110 | 264157 |
| CDS | 265950 | 266021 |
| CDS | 266075 | 266146 |
| CDS | 266417 | 266473 |
| CDS | 266726 | 266889 |
| CDS | 267112 | 267205 |
| CDS | 267534 | 267584 |
| CDS | 267806 | 267868 |
| CDS | 268131 | 268268 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001755 | STE_STE7 (from iTAK) nucleotide-sugar transport, S-adenosylmethionine_biosynthetic_process carbohydrate transport, |
| coexpression network | CFinderM001873 | GT47 GlycosylTransferases |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.