Gene details

Annotation of co-expression genes

PH01001249G0550's details annotation

1.Annotation

ICBR annotation: AP-3 complex subunit delta, putative, expressed

Blast result AT1G48760 : 1.00E-155
Blast annotation: delta-adaptin

2.Location

Scaffold: PH01001249
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	details
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001092	CBM20 Carbohydrate-Binding_Modules GH77 Glycoside_Hydrolases membrane coat, 4-alpha-glucanotransferase activity, starch_binding
coexpression network	CFinderM001302	membrane coat, malic enzyme activity, malate_dehydrogenase_(decarboxylating)_(NAD+)_activity malate metabolic process,
coexpression network	CFinderM001755	STE_STE7 (from iTAK) nucleotide-sugar transport, S-adenosylmethionine_biosynthetic_process carbohydrate transport,
coexpression network	CFinderM001891	Alanine,_aspartate_and_glutamate_metabolism carbamoyl_phosphate_biosynthetic_process glutamine_catabolic_process clathrin_coat membrane coat, clathrin_coat_assembly bZIP Transcription_Regulator(from PlantTFDB) RNA metabolic process,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF01602.19	Adaptin_N	47	553

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0005488	binding
GO:0006886	intracellular protein transport
GO:0016192	vesicle-mediated transport
GO:0030117	membrane coat

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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