Gene details

Annotation of co-expression genes

PH01002896G0040's details annotation

1.Annotation

ICBR annotation: RNA polymerase III subunit RPC82 family protein, putative, expressed

Blast result AT3G49000 : 7.30E-33
Blast annotation: RNA polymerase III subunit RPC82 family protein

2.Location

Scaffold: PH01002896
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001515	protein insertion into membrane, transcription, DNA-dependent, exonuclease activity,
coexpression network	CFinderM001755	STE_STE7 (from iTAK) nucleotide-sugar transport, S-adenosylmethionine_biosynthetic_process carbohydrate transport,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF05645.12	RNA_pol_Rpc82	2	185

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Purine metabolism	DNA-directed RNA polymerase III subunit RPC3[EC:2.7.7.6]	ko00230	K03023
Pyrimidine metabolism	DNA-directed RNA polymerase III subunit RPC3[EC:2.7.7.6]	ko00240	K03023
RNA polymerase	DNA-directed RNA polymerase III subunit RPC3[EC:2.7.7.6]	ko03020	K03023

10.Gene Ontology

GO Accession	GO Annotation
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0006351	transcription, DNA-dependent

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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