PH01000068G0070's details annotation
1.Annotation
ICBR annotation: bZIP transcription factor domain containing protein, expressed
Blast result AT2G40950 : 3.30E-66
Blast annotation: Basic-leucine zipper (bZIP) transcription factor family protein
2.Location
Scaffold: PH01000068
Strand: -
| Region | Start | End |
| gene | 36912 | 39881 |
| mRNA | 36912 | 39881 |
| exon | 36912 | 37507 |
| exon | 38372 | 39881 |
| CDS | 37065 | 37507 |
| CDS | 38372 | 39638 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001483 | eukaryotic translation initiation factor 3 complex, cytoplasm, valyl-tRNA aminoacylation, aminoacyl-tRNA_editing_activity valine-tRNA ligase activity, guanyl nucleotide binding, G-protein_beta/gamma-subunit_complex_binding G-protein coupled receptor signaling pathway, Aminoacyl-tRNA_biosynthesis |
| coexpression network | CFinderM001585 | bZIP Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001730 | Alanine,_aspartate_and_glutamate_metabolism TKL-Pl-2 (from iTAK) carbamoyl_phosphate_biosynthetic_process glutamine_catabolic_process clathrin_coat clathrin_coat_assembly Pyrimidine_metabolism bZIP Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001780 | S-adenosylmethionine_biosynthetic_process Cysteine_and_methionine_metabolism bZIP Transcription_Regulator(from PlantTFDB) methionine adenosyltransferase activity, |
| coexpression network | CFinderM001891 | Alanine,_aspartate_and_glutamate_metabolism carbamoyl_phosphate_biosynthetic_process glutamine_catabolic_process clathrin_coat membrane coat, clathrin_coat_assembly bZIP Transcription_Regulator(from PlantTFDB) RNA metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bZIP |
| Transcription_Regulator(from PlantTFDB) | bZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00170.20 | bZIP_1 | 117 | 179 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.