PH01000714G0600's details annotation
1.Annotation
ICBR annotation: exonuclease, putative, expressed
Blast result AT5G25800 : 7.00E-169
Blast annotation: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
2.Location
Scaffold: PH01000714
Strand: -
| Region | Start | End |
| gene | 378748 | 386075 |
| mRNA | 378748 | 386075 |
| exon | 378748 | 379543 |
| exon | 379677 | 379969 |
| exon | 380050 | 380231 |
| exon | 380404 | 380671 |
| exon | 380760 | 380820 |
| exon | 381207 | 381262 |
| exon | 381454 | 381513 |
| exon | 381709 | 381779 |
| exon | 381866 | 381973 |
| exon | 382582 | 382688 |
| exon | 382824 | 382957 |
| exon | 383766 | 383831 |
| exon | 383911 | 383967 |
| exon | 384516 | 384623 |
| exon | 384999 | 386075 |
| CDS | 379420 | 379543 |
| CDS | 379677 | 379969 |
| CDS | 380050 | 380231 |
| CDS | 380404 | 380671 |
| CDS | 380760 | 380820 |
| CDS | 381207 | 381262 |
| CDS | 381454 | 381513 |
| CDS | 381709 | 381779 |
| CDS | 381866 | 381973 |
| CDS | 382582 | 382688 |
| CDS | 382824 | 382957 |
| CDS | 383766 | 383831 |
| CDS | 383911 | 383967 |
| CDS | 384516 | 384623 |
| CDS | 384999 | 385061 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001515 | protein insertion into membrane, transcription, DNA-dependent, exonuclease activity, |
| coexpression network | CFinderM001891 | Alanine,_aspartate_and_glutamate_metabolism carbamoyl_phosphate_biosynthetic_process glutamine_catabolic_process clathrin_coat membrane coat, clathrin_coat_assembly bZIP Transcription_Regulator(from PlantTFDB) RNA metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00929.23 | RNase_T | 233 | 379 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome biogenesis in eukaryotes | RNA exonuclease 1 [EC:3.1.-.-] | ko03008 | K14570 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004527 | exonuclease activity |
| GO:0005622 | intracellular |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.