Gene details

Annotation of co-expression genes

PH01000300G0290's details annotation

1.Annotation

ICBR annotation: CCR4-NOT transcription factor, putative, expressed

Blast result AT5G18230 : 0.00E+00
Blast annotation: transcription regulator NOT2/NOT3/NOT5 family protein

2.Location

Scaffold: PH01000300
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001035	GT14 GlycosylTransferases CAMTA Transcription_Regulator(from PlantTFDB) microtubule, protein complex, RNA_degradation Phagosome
coexpression network	CFinderM001126	negative_regulation_of_transcription,_DNA-templated RNA_degradation
coexpression network	CFinderM001425	chromosome organization, negative_regulation_of_transcription,_DNA-templated chromosome, RNA_degradation
coexpression network	CFinderM001429	negative_regulation_of_transcription,_DNA-templated FMN binding,
coexpression network	CFinderM001890	clathrin_coat_assembly clathrin_coat 1-phosphatidylinositol_binding clathrin_binding RNA_degradation regulation of transcription, DNA-dependent, phospholipid binding,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
RNA degradation	CCR4-NOT transcription complex subunit 3	ko03018	K12580

10.Gene Ontology

GO Accession	GO Annotation
GO:0005634	nucleus
GO:0006355	regulation of transcription, DNA-dependent

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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