PH01000496G0830's details annotation
1.Annotation
ICBR annotation: ubiquitin-conjugating enzyme E2 W, putative, expressed
Blast result AT1G45050 : 3.10E-85
Blast annotation: Ubiquitin-conjugating enzyme family protein
2.Location
Scaffold: PH01000496
Strand: -
| Region | Start | End |
| gene | 528633 | 530596 |
| mRNA | 528633 | 530596 |
| exon | 528633 | 528959 |
| exon | 529487 | 529589 |
| exon | 529779 | 529842 |
| exon | 529944 | 530046 |
| exon | 530285 | 530388 |
| exon | 530506 | 530596 |
| CDS | 528800 | 528959 |
| CDS | 529487 | 529589 |
| CDS | 529779 | 529842 |
| CDS | 529944 | 530046 |
| CDS | 530285 | 530388 |
| CDS | 530506 | 530535 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001204 | Mre11 complex, nucleolus, DNA repair, |
| coexpression network | CFinderM001660 | SNARE_interactions_in_vesicular_transport |
| coexpression network | CFinderM001861 | SNARE_interactions_in_vesicular_transport acid-amino acid ligase activity, Ubiquitin_mediated_proteolysis mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 19 | 154 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | ubiquitin-conjugating enzyme E2 W [EC:6.3.2.19] | ko04120 | K10688 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.