PH01003687G0140's details annotation
1.Annotation
ICBR annotation: nucleolar complex protein 2, putative, expressed
Blast result AT3G55510 : 4.00E-115
Blast annotation: Noc2p family
2.Location
Scaffold: PH01003687
Strand: +
| Region | Start | End |
| gene | 74189 | 80532 |
| mRNA | 74189 | 80532 |
| exon | 74189 | 74314 |
| exon | 74616 | 74825 |
| exon | 75672 | 75737 |
| exon | 75889 | 76404 |
| exon | 77015 | 77314 |
| exon | 78181 | 78507 |
| exon | 78856 | 79062 |
| exon | 79330 | 79419 |
| exon | 79528 | 79600 |
| exon | 80333 | 80532 |
| CDS | 74288 | 74314 |
| CDS | 74616 | 74825 |
| CDS | 75672 | 75737 |
| CDS | 75889 | 76404 |
| CDS | 77015 | 77314 |
| CDS | 78181 | 78507 |
| CDS | 78856 | 79062 |
| CDS | 79330 | 79419 |
| CDS | 79528 | 79600 |
| CDS | 80333 | 80400 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001204 | Mre11 complex, nucleolus, DNA repair, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03715.12 | Noc2 | 304 | 597 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.