PH01001450G0190's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G62580 : 1.30E-83
Blast annotation: Late embryogenesis abundant protein (LEA) family protein
2.Location
Scaffold: PH01001450
Strand: -
| Region | Start | End |
| gene | 151773 | 155224 |
| mRNA | 151773 | 155224 |
| exon | 151773 | 152683 |
| exon | 154430 | 154649 |
| exon | 154778 | 155224 |
| CDS | 152468 | 152683 |
| CDS | 154430 | 154649 |
| CDS | 154778 | 154974 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001204 | Mre11 complex, nucleolus, DNA repair, |
| coexpression network | CFinderM001315 | STE_STE-Pl (from iTAK) |
| coexpression network | CFinderM001463 | alpha-Linolenic_acid_metabolism Fatty_acid_metabolism GRAS Transcription_Regulator(from PlantTFDB) fatty acid metabolic process, 3-hydroxyacyl-CoA_dehydrogenase_activity |
| coexpression network | CFinderM001527 | PHD Transcription_Regulator(from iTAK) guanyl-nucleotide exchange factor activity, |
| coexpression network | CFinderM001659 | protein import into nucleus, nuclear pore, |
| coexpression network | CFinderM001660 | SNARE_interactions_in_vesicular_transport |
| coexpression network | CFinderM001861 | SNARE_interactions_in_vesicular_transport acid-amino acid ligase activity, Ubiquitin_mediated_proteolysis mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13664.5 | DUF4149 | 44 | 145 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.