PH01000099G0750's details annotation
1.Annotation
ICBR annotation: acetamidase, putative, expressed
Blast result AT4G37560 : 3.00E-132
Blast annotation: Acetamidase/Formamidase family protein
2.Location
Scaffold: PH01000099
Strand: -
| Region | Start | End |
| gene | 533534 | 536601 |
| mRNA | 533534 | 536601 |
| exon | 533534 | 534066 |
| exon | 534181 | 534288 |
| exon | 534375 | 534618 |
| exon | 535288 | 535523 |
| exon | 535740 | 535930 |
| exon | 536010 | 536247 |
| exon | 536354 | 536601 |
| CDS | 534013 | 534066 |
| CDS | 534181 | 534288 |
| CDS | 534375 | 534618 |
| CDS | 535288 | 535523 |
| CDS | 535740 | 535930 |
| CDS | 536010 | 536247 |
| CDS | 536354 | 536572 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000899 | glucose-6-phosphate dehydrogenase activity, glucose metabolic process, galactosyltransferase activity, NADP binding, Glutathione_metabolism Pentose_phosphate_pathway Glycine,_serine_and_threonine_metabolism Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin protein glycosylation, phosphoserine phosphatase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, chorismate mutase activity, chorismate metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03069.14 | FmdA_AmdA | 12 | 276 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glyoxylate and dicarboxylate metabolism | formamidase [EC:3.5.1.49] | ko00630 | K01455 |
| Nitrogen metabolism | formamidase [EC:3.5.1.49] | ko00910 | K01455 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.