Annotation of co-expression genes

PH01000101G0290's details annotation

1.Annotation

ICBR annotation: glycosyl hydrolase, family 31, putative, expressed

Blast result AT5G63840 : 0.00E+00
Blast annotation: Glycosyl hydrolases family 31 protein

2.Location

Scaffold: PH01000101
Strand: +

RegionStartEnd
gene185801195778
mRNA185801195778
exon185801188262
exon190194190336
exon190768192237
exon192355192628
exon192706192822
exon193203193288
exon193376193582
exon194185194310
exon195208195778
CDS188178188262
CDS190194190336
CDS190768192237
CDS192355192628
CDS192706192822
CDS193203193288
CDS193376193582
CDS194185194310
CDS195208195315

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001286GH31 Glycoside_Hydrolases
ER_membrane_protein_complex
phosphoacetylglucosamine mutase activity,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Glycoside_HydrolasesGH31

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13802.5Gal_mutarotas_2271347
PF01055.25Glyco_hydro_31378697

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
N-Glycan biosynthesisalpha 1,3-glucosidase [EC:3.2.1.84]ko00510K05546
Protein processing in endoplasmic reticulumalpha 1,3-glucosidase [EC:3.2.1.84]ko04141K05546

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
GO:0030246carbohydrate binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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