PH01000103G0240's details annotation
1.Annotation
ICBR annotation: histone acetyltransferase GCN5, putative, expressed
Blast result AT3G54610 : 2.10E-49
Blast annotation: histone acetyltransferase of the GNAT family 1
2.Location
Scaffold: PH01000103
Strand: +
| Region | Start | End |
| gene | 160025 | 169865 |
| mRNA | 160025 | 169865 |
| exon | 160025 | 163784 |
| exon | 164116 | 164196 |
| exon | 165077 | 165148 |
| exon | 165534 | 165702 |
| exon | 166672 | 166715 |
| exon | 166957 | 167056 |
| exon | 167236 | 167304 |
| exon | 168663 | 168756 |
| exon | 169064 | 169103 |
| exon | 169389 | 169865 |
| CDS | 163453 | 163784 |
| CDS | 164116 | 164196 |
| CDS | 165077 | 165148 |
| CDS | 165534 | 165702 |
| CDS | 166672 | 166715 |
| CDS | 166957 | 167056 |
| CDS | 167236 | 167304 |
| CDS | 168663 | 168756 |
| CDS | 169064 | 169103 |
| CDS | 169389 | 169452 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000592 | transcription, DNA-dependent, cytoplasm, |
| coexpression network | CFinderM001674 | PHD Transcription_Regulator(from iTAK) sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity, pentose-phosphate shunt, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.