Annotation of co-expression genes

PH01000107G0110's details annotation

1.Annotation

ICBR annotation: Dicer, putative, expressed

Blast result AT1G01040 : 8.00E-141
Blast annotation: dicer-like 1

2.Location

Scaffold: PH01000107
Strand: -

RegionStartEnd
gene8179289116
mRNA8179289116
exon8179282125
exon8290882944
exon8458685169
exon8523385352
exon8542885589
exon8624786426
exon8695887015
exon8735887518
exon8795688116
exon8860989116
CDS8201882125
CDS8290882944
CDS8458685169
CDS8523385352
CDS8542885589
CDS8624786426
CDS8695887015
CDS8735887518
CDS8795688116
CDS8860988792

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001218
coexpression networkCFinderM001506chromosome, centromeric region,
mitosis,
helicase activity,
RNA_degradation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00271.30Helicase_C115157

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0005515protein binding
GO:0005524ATP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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