PH01000110G0260's details annotation
1.Annotation
ICBR annotation: OsSAUR57 - Auxin-responsive SAUR gene family member, expressed
Blast result AT3G12955 : 2.20E-16
Blast annotation: SAUR-like auxin-responsive protein family
2.Location
Scaffold: PH01000110
Strand: -
| Region | Start | End |
| gene | 224691 | 226756 |
| mRNA | 224691 | 226756 |
| exon | 224691 | 225818 |
| exon | 226511 | 226756 |
| CDS | 225440 | 225818 |
| CDS | 226511 | 226533 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001113 | HB-KNOX Transcription_Regulator(from iTAK) HB-other Transcription_Regulator(from PlantTFDB) cytokinesis microtubule cytoskeleton organization, microtubule binding, |
| coexpression network | CFinderM001114 | MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02519.13 | Auxin_inducible | 31 | 106 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.