Annotation of co-expression genes

PH01000111G0760's details annotation

1.Annotation

ICBR annotation: methyltransferase, putative, expressed

Blast result AT5G64030 : 0.00E+00
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

2.Location

Scaffold: PH01000111
Strand: -

RegionStartEnd
gene555085560869
mRNA555085560869
exon555085556041
exon556393556587
exon557055557327
exon557412557586
exon557968558078
exon558156558426
exon558894559043
exon559140560869
CDS555825556041
CDS556393556587
CDS557055557327
CDS557412557586
CDS557968558078
CDS558156558426
CDS558894559043
CDS559140560183

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001503methyltransferase activity,
DNA metabolic process,
nuclease activity,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
cell redox homeostasis,
Nucleotide_excision_repair

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03141.15Methyltransf_29294798

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008168methyltransferase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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