PH01000114G1300's details annotation
1.Annotation
ICBR annotation: VIL2 protein, putative, expressed
Blast result AT4G30200 : 4.00E-126
Blast annotation: vernalization5/VIN3-like
2.Location
Scaffold: PH01000114
Strand: -
| Region | Start | End |
| gene | 890077 | 898661 |
| mRNA | 890077 | 898661 |
| exon | 890077 | 890427 |
| exon | 891084 | 892281 |
| exon | 892359 | 892666 |
| exon | 894009 | 894023 |
| exon | 894057 | 894738 |
| exon | 896614 | 898661 |
| CDS | 890322 | 890427 |
| CDS | 891084 | 892281 |
| CDS | 892359 | 892666 |
| CDS | 894009 | 894023 |
| CDS | 894057 | 894738 |
| CDS | 896614 | 896695 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001516 | Ribosome_biogenesis_in_eukaryotes MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001517 | N-acetyl-gamma-glutamyl-phosphate reductase activity, cellular amino acid biosynthetic process, cellular amino acid metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07227.10 | PHD_Oberon | 162 | 286 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.