PH01000118G0030's details annotation
1.Annotation
ICBR annotation: uncharacterized protein At4g06744 precursor, putative, expressed
Blast result AT4G06744 : 1.40E-89
Blast annotation: Leucine-rich repeat (LRR) family protein
2.Location
Scaffold: PH01000118
Strand: -
| Region | Start | End |
| gene | 19295 | 22081 |
| mRNA | 19295 | 22081 |
| exon | 19295 | 22081 |
| CDS | 20670 | 22049 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000013 | cellulose biosynthetic process, cellulose synthase (UDP-forming) activity, response to oxidative stress, extracellular polysaccharide biosynthetic process, hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate metabolic process, |
| coexpression network | CFinderM000378 | extracellular region, sexual reproduction, RNA_transport mRNA_surveillance_pathway |
| coexpression network | CFinderM000528 | RLK-Pelle_RLCK-XIII (from iTAK) base-excision repair, Base_excision_repair DNA-3-methyladenine glycosylase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.