PH01000118G0790's details annotation
1.Annotation
ICBR annotation: AT hook motif family protein, expressed
Blast result AT4G31880 : 4.00E-82
Blast annotation: -
2.Location
Scaffold: PH01000118
Strand: +
| Region | Start | End |
| gene | 526010 | 533020 |
| mRNA | 526010 | 533020 |
| exon | 526010 | 526391 |
| exon | 526598 | 526801 |
| exon | 526879 | 527060 |
| exon | 527961 | 528087 |
| exon | 528176 | 528367 |
| exon | 528620 | 529336 |
| exon | 529791 | 529892 |
| exon | 529982 | 530064 |
| exon | 530878 | 530929 |
| exon | 531073 | 531141 |
| exon | 531230 | 531264 |
| exon | 531937 | 532008 |
| exon | 532101 | 533020 |
| CDS | 526278 | 526391 |
| CDS | 526598 | 526801 |
| CDS | 526879 | 527060 |
| CDS | 527961 | 528087 |
| CDS | 528176 | 528367 |
| CDS | 528620 | 529336 |
| CDS | 529791 | 529892 |
| CDS | 529982 | 530064 |
| CDS | 530878 | 530929 |
| CDS | 531073 | 531141 |
| CDS | 531230 | 531264 |
| CDS | 531937 | 532008 |
| CDS | 532101 | 532608 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000833 | 7-methylguanosine mRNA capping, mRNA processing, mRNA guanylyltransferase activity, Ubiquitin_mediated_proteolysis mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.