PH01000120G0050's details annotation
1.Annotation
ICBR annotation: targeting protein for Xklp2, putative, expressed
Blast result AT4G32330 : 2.80E-37
Blast annotation: TPX2 (targeting protein for Xklp2) protein family
2.Location
Scaffold: PH01000120
Strand: -
| Region | Start | End |
| gene | 25003 | 28640 |
| mRNA | 25003 | 28640 |
| exon | 25003 | 25169 |
| exon | 25220 | 25330 |
| exon | 25419 | 25490 |
| exon | 25592 | 25859 |
| exon | 26421 | 26482 |
| exon | 26595 | 26774 |
| exon | 26857 | 28640 |
| CDS | 25161 | 25169 |
| CDS | 25220 | 25330 |
| CDS | 25419 | 25490 |
| CDS | 25592 | 25859 |
| CDS | 26421 | 26482 |
| CDS | 26595 | 26774 |
| CDS | 26857 | 27081 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000192 | protein serine/threonine kinase activity, protein kinase activity, exonuclease activity, protein phosphorylation, transferase activity, transferring phosphorus-containing groups, ATP binding, polysaccharide_binding RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK (from iTAK) ubiquitin ligase complex, RLK-Pelle_LRR-Xb-2 (from iTAK) |
| coexpression network | CFinderM000530 | RLK-Pelle_LRR-XIV (from iTAK) transmembrane transport, GRAS Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000531 | transmembrane transport, Plant_hormone_signal_transduction |
| coexpression network | CFinderM000629 | RLK-Pelle_LRR-XIV (from iTAK) AUX/IAA Transcription_Regulator(from iTAK) transcription factor TFIID complex, Drug_metabolism_-_cytochrome_P450 Metabolism_of_xenobiotics_by_cytochrome_P450 Basal_transcription_factors |
| coexpression network | CFinderM000649 | B3 Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001127 | RLK-Pelle_L-LEC (from iTAK) |
| coexpression network | CFinderM001593 | vacuolar proton-transporting V-type ATPase, V1 domain, ATP hydrolysis coupled proton transport, proton-transporting ATPase activity, rotational mechanism, binding, |
| coexpression network | CFinderM001687 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06886.10 | TPX2 | 234 | 290 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.