Annotation of co-expression genes

PH01000121G1170's details annotation

1.Annotation

ICBR annotation: kinesin motor domain containing protein, putative, expressed

Blast result AT3G16060 : 0.00E+00
Blast annotation: ATP binding microtubule motor family protein

2.Location

Scaffold: PH01000121
Strand: +

RegionStartEnd
gene797320802559
mRNA797320802559
exon797320797850
exon797943798113
exon798675798851
exon798972799184
exon799366799447
exon799498799696
exon799790800092
exon800441800659
exon800738801194
exon801274801339
exon801427802559
CDS797755797850
CDS797943798113
CDS798675798851
CDS798972799184
CDS799366799447
CDS799498799696
CDS799790800092
CDS800441800659
CDS800738801194
CDS801274801339
CDS801427801606

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001341RLK-Pelle_LRR-II (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
microtubule associated complex,
protein phosphorylation,
microtubule-based movement,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00225.22Kinesin150490

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003777microtubule motor activity
GO:0005524ATP binding
GO:0005875microtubule associated complex
GO:0007018microtubule-based movement

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.