PH01000125G1100's details annotation
1.Annotation
ICBR annotation: 1,3-beta-glucan synthase component domain containing protein, expressed
Blast result AT5G13000 : 0
Blast annotation: glucan synthase-like 12
2.Location
Scaffold: PH01000125
Strand: +
| Region | Start | End |
| gene | 766160 | 775768 |
| mRNA | 766160 | 775768 |
| exon | 766160 | 766388 |
| exon | 766507 | 766575 |
| exon | 766661 | 766835 |
| exon | 766888 | 766945 |
| exon | 768107 | 768182 |
| exon | 771412 | 771472 |
| exon | 771709 | 771853 |
| exon | 772371 | 772490 |
| exon | 772572 | 772690 |
| exon | 772828 | 772911 |
| exon | 773121 | 773233 |
| exon | 773313 | 773542 |
| exon | 773621 | 774418 |
| exon | 774500 | 774550 |
| exon | 774807 | 774992 |
| exon | 775078 | 775768 |
| CDS | 766214 | 766388 |
| CDS | 766507 | 766575 |
| CDS | 766661 | 766835 |
| CDS | 766888 | 766945 |
| CDS | 768107 | 768182 |
| CDS | 771412 | 771472 |
| CDS | 771709 | 771853 |
| CDS | 772371 | 772490 |
| CDS | 772572 | 772690 |
| CDS | 772828 | 772911 |
| CDS | 773121 | 773233 |
| CDS | 773313 | 773542 |
| CDS | 773621 | 774418 |
| CDS | 774500 | 774550 |
| CDS | 774807 | 774992 |
| CDS | 775078 | 775326 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000918 | GT48 GlycosylTransferases RLK-Pelle_RLCK-V (from iTAK) TKL-Pl-4 (from iTAK) microtubule cytoskeleton organization, (1->3)-beta-D-glucan biosynthetic process, cytokinesis 1,3-beta-D-glucan synthase complex, mRNA_surveillance_pathway |
| coexpression network | CFinderM001560 | HB-KNOX Transcription_Regulator(from iTAK) GT48 GlycosylTransferases |
| coexpression network | CFinderM001561 | GT48 GlycosylTransferases HB-KNOX Transcription_Regulator(from iTAK) TKL-Pl-6 (from iTAK) TALE Transcription_Regulator(from PlantTFDB) 1,3-beta-D-glucan synthase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT48 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02364.14 | Glucan_synthase | 39 | 142 |
| PF02364.14 | Glucan_synthase | 204 | 719 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000148 | 1,3-beta-D-glucan synthase complex |
| GO:0003843 | 1,3-beta-D-glucan synthase activity |
| GO:0006075 | (1->3)-beta-D-glucan biosynthetic process |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.