PH01000131G1400's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G12650 : 6.00E-49
Blast annotation: -
2.Location
Scaffold: PH01000131
Strand: +
| Region | Start | End |
| gene | 916259 | 919922 |
| mRNA | 916259 | 919922 |
| exon | 916259 | 916762 |
| exon | 916839 | 917029 |
| exon | 917121 | 917187 |
| exon | 917968 | 918020 |
| exon | 918369 | 918423 |
| exon | 918529 | 918603 |
| exon | 919252 | 919369 |
| exon | 919452 | 919498 |
| exon | 919587 | 919922 |
| CDS | 916643 | 916762 |
| CDS | 916839 | 917029 |
| CDS | 917121 | 917187 |
| CDS | 917968 | 918020 |
| CDS | 918369 | 918423 |
| CDS | 918529 | 918603 |
| CDS | 919252 | 919369 |
| CDS | 919452 | 919498 |
| CDS | 919587 | 919688 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000433 | Ribosome_biogenesis_in_eukaryotes ATP-dependent helicase activity, threonine-tRNA ligase activity, helicase activity, |
| coexpression network | CFinderM001030 | protein import into mitochondrial inner membrane, RLK-Pelle_L-LEC (from iTAK) protein methylation, |
| coexpression network | CFinderM001031 | intracellular, translation, structural constituent of ribosome, protein import into mitochondrial inner membrane, Ribosome RLK-Pelle_L-LEC (from iTAK) large ribosomal subunit, ribosome biogenesis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06102.11 | RRP36 | 99 | 264 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.