PH01000133G1110's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G06960 : 4.00E-102
Blast annotation: pigment defective 320
2.Location
Scaffold: PH01000133
Strand: +
| Region | Start | End |
| gene | 649841 | 657656 |
| mRNA | 649841 | 657656 |
| exon | 649841 | 650412 |
| exon | 651290 | 651555 |
| exon | 651643 | 651662 |
| exon | 651787 | 652141 |
| exon | 652610 | 652800 |
| exon | 654020 | 654190 |
| exon | 656670 | 657656 |
| CDS | 650219 | 650412 |
| CDS | 651290 | 651555 |
| CDS | 651643 | 651662 |
| CDS | 651787 | 652141 |
| CDS | 652610 | 652800 |
| CDS | 654020 | 654190 |
| CDS | 656670 | 656867 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000236 | NAK (from iTAK) STAT Transcription_Regulator(from PlantTFDB) Glycine,_serine_and_threonine_metabolism magnesium_ion_transport TKL-Pl-5 (from iTAK) magnesium_ion_transmembrane_transporter_activity |
| coexpression network | CFinderM001014 | SET Transcription_Regulator(from iTAK) endoplasmic reticulum, nucleus, ubiquitin ligase complex, histone_methylation |
| coexpression network | CFinderM001488 | STAT Transcription_Regulator(from PlantTFDB) TKL-Pl-5 (from iTAK) Lysine_degradation nucleus, chloroplast, SET Transcription_Regulator(from iTAK) histone_methylation mRNA processing, histone_lysine_methylation |
| coexpression network | CFinderM001851 | katanin_complex microtubule_severing exocyst, exocytosis, microtubule binding, triglyceride lipase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.