CFinderM001488's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
STAT Transcription_Regulator(from PlantTFDB)0.002734375GFam
TKL-Pl-5 (from iTAK)0.005465674GFam
Lysine_degradation0.006980993KEGG
nucleus,0.016440114GO:0005634
chloroplast,0.016440114GO:0009507
SET Transcription_Regulator(from iTAK)0.022686275GFam
histone_methylation0.0290638GO:0016571
mRNA processing,0.0290638GO:0006397
histone_lysine_methylation0.0290638GO:0034968

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000064G2020VH1-interacting kinaseAT1G14000 (8.00E-128)
PH01000133G1110pigment defective 320AT3G06960 (4.00E-102)
PH01000556G0480SU(VAR)3-9 homolog 1AT5G04940 (1.00E-157)
PH01000696G0080Plastid-lipid associated protein PAP / fibrillin family proteinAT5G09820 (8.40E-55)
PH01001233G0100Intron maturase, type II family proteinAT5G46920 (0.00E+00)
PH01002341G0180-AT4G22320 (3.10E-19)
PH01023929G0010cleavage and polyadenylation specificity factor 73-IAT1G61010 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000008TKL-Pl-4 (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
transferase activity, transferring phosphorus-containing groups,
protein phosphorylation,
Spliceosome
protein kinase activity,
ATP binding,
protein serine/threonine kinase activity,
exocyst,
chloroplast,
details
CFinderM000163SET Transcription_Regulator(from iTAK)
histone_methylation
histone_lysine_methylation
nucleus,
RNA-directed RNA polymerase activity,
zinc ion binding,
histone_binding
histone-lysine N-methyltransferase activity,
details
CFinderM000236NAK (from iTAK)
STAT Transcription_Regulator(from PlantTFDB)
Glycine,_serine_and_threonine_metabolism
magnesium_ion_transport
TKL-Pl-5 (from iTAK)
magnesium_ion_transmembrane_transporter_activity
details
CFinderM000323Diterpenoid_biosynthesis
Lysine_degradation
SET Transcription_Regulator(from iTAK)
histone_methylation
electron carrier activity,
heme binding,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,
iron ion binding,
histone_lysine_methylation
histone_binding
histone-lysine N-methyltransferase activity,
oxidation-reduction process,
details
CFinderM000947protein import into nucleus,
nucleobase-containing compound metabolic process,
Ribosome_biogenesis_in_eukaryotes
details
CFinderM001014SET Transcription_Regulator(from iTAK)
endoplasmic reticulum,
nucleus,
ubiquitin ligase complex,
histone_methylation
details
CFinderM001101SET Transcription_Regulator(from iTAK)
histone_methylation
histone_lysine_methylation
Lysine_degradation
nucleus,
ubiquitin ligase complex,
histone-lysine N-methyltransferase activity,
histone_binding
RNA_degradation
transcription, DNA-dependent,
protein ubiquitination,
details
CFinderM001362Protein_processing_in_endoplasmic_reticulum
mannose biosynthetic process,
Lysine_degradation
SET Transcription_Regulator(from iTAK)
histone_methylation
phosphomannomutase activity,
histone_lysine_methylation
details
CFinderM001521Lipoic_acid_metabolism
NAK (from iTAK)
AP2/ERF-AP2 Transcription_Regulator(from iTAK)
chloroplast,
AP2 Transcription_Regulator(from PlantTFDB)
lipoate biosynthetic process,
RNA-directed RNA polymerase activity,
lipoate synthase activity,
details
CFinderM001705Lysine_degradation
SET Transcription_Regulator(from iTAK)
histone_methylation
histone_lysine_methylation
chloroplast,
histone-lysine N-methyltransferase activity,
histone_binding
ubiquitin-dependent protein catabolic process,
details
CFinderM001851katanin_complex
microtubule_severing
exocyst,
exocytosis,
microtubule binding,
triglyceride lipase activity,
details

4.Expression profilings