CFinderM000163's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
SET Transcription_Regulator(from iTAK)0.017057553GFam
histone_methylation0.018880861GO:0016571
histone_lysine_methylation0.020730052GO:0034968
nucleus,0.02694785GO:0005634
RNA-directed RNA polymerase activity,0.037407476GO:0003968
zinc ion binding,0.040398359GO:0008270
histone_binding0.040398359GO:0042393
histone-lysine N-methyltransferase activity,0.040398359GO:0018024

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000005G4150FRIGIDA-like proteinAT5G48385 (2.00E-127)
PH01000010G0140Tetratricopeptide repeat (TPR)-like superfamily proteinAT4G35130 (0.00E+00)
PH01000041G1140RNA-dependent RNA polymerase 2AT4G11130 (0.00E+00)
PH01000046G0920Kinase-related protein of unknown function (DUF1296)AT4G18150 (4.30E-16)
PH01000391G0470-- (-)
PH01000428G0090-- (-)
PH01000556G0480SU(VAR)3-9 homolog 1AT5G04940 (1.00E-157)
PH01000949G0380Replication factor-A protein 1-relatedAT4G19130 (0.00E+00)
PH01001495G0380FRIGIDA-like proteinAT5G48385 (2.00E-134)
PH01002970G0210-- (-)
PH01003898G0120ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinAT4G24690 (1.60E-57)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000236NAK (from iTAK)
STAT Transcription_Regulator(from PlantTFDB)
Glycine,_serine_and_threonine_metabolism
magnesium_ion_transport
TKL-Pl-5 (from iTAK)
magnesium_ion_transmembrane_transporter_activity
details
CFinderM000323Diterpenoid_biosynthesis
Lysine_degradation
SET Transcription_Regulator(from iTAK)
histone_methylation
electron carrier activity,
heme binding,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,
iron ion binding,
histone_lysine_methylation
histone_binding
histone-lysine N-methyltransferase activity,
oxidation-reduction process,
details
CFinderM001014SET Transcription_Regulator(from iTAK)
endoplasmic reticulum,
nucleus,
ubiquitin ligase complex,
histone_methylation
details
CFinderM001101SET Transcription_Regulator(from iTAK)
histone_methylation
histone_lysine_methylation
Lysine_degradation
nucleus,
ubiquitin ligase complex,
histone-lysine N-methyltransferase activity,
histone_binding
RNA_degradation
transcription, DNA-dependent,
protein ubiquitination,
details
CFinderM001311Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
serine-type peptidase activity,
CAMK_CDPK (from iTAK)
histone modification,
phospholipid biosynthetic process,
aromatic amino acid family biosynthetic process,
phosphatidylserine decarboxylase activity,
3-deoxy-7-phosphoheptulonate synthase activity,
details
CFinderM001362Protein_processing_in_endoplasmic_reticulum
mannose biosynthetic process,
Lysine_degradation
SET Transcription_Regulator(from iTAK)
histone_methylation
phosphomannomutase activity,
histone_lysine_methylation
details
CFinderM001420heat shock protein binding,
Protein_processing_in_endoplasmic_reticulum
unfolded protein binding,
CAMK_CDPK (from iTAK)
response to heat,
protein folding,
details
CFinderM001482Protein_processing_in_endoplasmic_reticulum
details
CFinderM001488STAT Transcription_Regulator(from PlantTFDB)
TKL-Pl-5 (from iTAK)
Lysine_degradation
nucleus,
chloroplast,
SET Transcription_Regulator(from iTAK)
histone_methylation
mRNA processing,
histone_lysine_methylation
details
CFinderM001521Lipoic_acid_metabolism
NAK (from iTAK)
AP2/ERF-AP2 Transcription_Regulator(from iTAK)
chloroplast,
AP2 Transcription_Regulator(from PlantTFDB)
lipoate biosynthetic process,
RNA-directed RNA polymerase activity,
lipoate synthase activity,
details
CFinderM001705Lysine_degradation
SET Transcription_Regulator(from iTAK)
histone_methylation
histone_lysine_methylation
chloroplast,
histone-lysine N-methyltransferase activity,
histone_binding
ubiquitin-dependent protein catabolic process,
details
CFinderM001728NAK (from iTAK)
vacuolar_proton-transporting_V-type_ATPase,_V0_domain
proton-transporting V-type ATPase, V0 domain,
exocyst,
ATP hydrolysis coupled proton transport,
exocytosis,
Oxidative_phosphorylation
Phagosome
details
CFinderM001742GT31 GlycosylTransferases
Basal_transcription_factors
fatty-acyl-CoA binding,
TBP-class_protein_binding
ubiquitin-dependent protein catabolic process,
protein glycosylation,
galactosyltransferase activity,
ubiquitin thiolesterase activity,
details

4.Expression profilings


Show details about module gene expression profiling