Function module details

CFinderM001521's details annotation

Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein

This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function Annotation	FDR	Gene Ontolog
Lipoic_acid_metabolism	0.001312172	KEGG
NAK (from iTAK)	0.006183536	GFam
AP2/ERF-AP2 Transcription_Regulator(from iTAK)	0.006183536	GFam
chloroplast,	0.006359973	GO:0009507
AP2 Transcription_Regulator(from PlantTFDB)	0.006866302	GFam
lipoate biosynthetic process,	0.009277479	GO:0009107
RNA-directed RNA polymerase activity,	0.019216547	GO:0003968
lipoate synthase activity,	0.019216547	GO:0016992

2.Module member annotation

Gene ID	Annotation	Arabidopsis ortholog (Blast e-value)
PH01000041G1140	RNA-dependent RNA polymerase 2	AT4G11130 (0.00E+00)
PH01000402G0980	Radical SAM superfamily protein	AT5G08415 (1.00E-132)
PH01001341G0150	Integrase-type DNA-binding superfamily protein	AT3G54320 (2.00E-73)
PH01002341G0180	-	AT4G22320 (3.10E-19)
PH01002754G0240	serine/threonine protein kinase 3	AT5G08160 (8.20E-88)
PH01004465G0010	acyl-CoA binding protein 4	AT3G05420 (1.80E-28)

3.Direct connection functional modules

Module ID	Function Annotation	Overlap condition
CFinderM000163	SET Transcription_Regulator(from iTAK) histone_methylation histone_lysine_methylation nucleus, RNA-directed RNA polymerase activity, zinc ion binding, histone_binding histone-lysine N-methyltransferase activity,	details
CFinderM000236	NAK (from iTAK) STAT Transcription_Regulator(from PlantTFDB) Glycine,_serine_and_threonine_metabolism magnesium_ion_transport TKL-Pl-5 (from iTAK) magnesium_ion_transmembrane_transporter_activity	details
CFinderM001251	NAK (from iTAK) magnesium_ion_transport magnesium_ion_transmembrane_transporter_activity triglyceride lipase activity, lipid metabolic process, glycopeptide_alpha-N-acetylgalactosaminidase_activity membrane,	details
CFinderM001488	STAT Transcription_Regulator(from PlantTFDB) TKL-Pl-5 (from iTAK) Lysine_degradation nucleus, chloroplast, SET Transcription_Regulator(from iTAK) histone_methylation mRNA processing, histone_lysine_methylation	details
CFinderM001705	Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation histone_lysine_methylation chloroplast, histone-lysine N-methyltransferase activity, histone_binding ubiquitin-dependent protein catabolic process,	details
CFinderM001728	NAK (from iTAK) vacuolar_proton-transporting_V-type_ATPase,_V0_domain proton-transporting V-type ATPase, V0 domain, exocyst, ATP hydrolysis coupled proton transport, exocytosis, Oxidative_phosphorylation Phagosome	details
CFinderM001794	NAK (from iTAK) vacuolar_proton-transporting_V-type_ATPase,_V0_domain proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, Phagosome Oxidative_phosphorylation hydrogen ion transmembrane transporter activity, calcium ion transport, myosin complex, calcium:proton_antiporter_activity motor activity, cation transmembrane transporter activity,	details

4.Expression profilings