PH01002754G0240's details annotation
1.Annotation
ICBR annotation: serine/threonine-protein kinase 16, putative, expressed
Blast result AT5G08160 : 8.20E-88
Blast annotation: serine/threonine protein kinase 3
2.Location
Scaffold: PH01002754
Strand: +
| Region | Start | End |
| gene | 180930 | 188138 |
| mRNA | 180930 | 188138 |
| exon | 180930 | 181851 |
| exon | 182488 | 182494 |
| exon | 182956 | 183098 |
| exon | 183648 | 183851 |
| exon | 185454 | 185597 |
| exon | 186091 | 186276 |
| exon | 186524 | 186648 |
| exon | 187680 | 188138 |
| CDS | 181702 | 181851 |
| CDS | 182488 | 182494 |
| CDS | 182956 | 183098 |
| CDS | 183648 | 183851 |
| CDS | 185454 | 185597 |
| CDS | 186091 | 186276 |
| CDS | 186524 | 186648 |
| CDS | 187680 | 187908 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000236 | NAK (from iTAK) STAT Transcription_Regulator(from PlantTFDB) Glycine,_serine_and_threonine_metabolism magnesium_ion_transport TKL-Pl-5 (from iTAK) magnesium_ion_transmembrane_transporter_activity |
| coexpression network | CFinderM001251 | NAK (from iTAK) magnesium_ion_transport magnesium_ion_transmembrane_transporter_activity triglyceride lipase activity, lipid metabolic process, glycopeptide_alpha-N-acetylgalactosaminidase_activity membrane, |
| coexpression network | CFinderM001521 | Lipoic_acid_metabolism NAK (from iTAK) AP2/ERF-AP2 Transcription_Regulator(from iTAK) chloroplast, AP2 Transcription_Regulator(from PlantTFDB) lipoate biosynthetic process, RNA-directed RNA polymerase activity, lipoate synthase activity, |
| coexpression network | CFinderM001728 | NAK (from iTAK) vacuolar_proton-transporting_V-type_ATPase,_V0_domain proton-transporting V-type ATPase, V0 domain, exocyst, ATP hydrolysis coupled proton transport, exocytosis, Oxidative_phosphorylation Phagosome |
| coexpression network | CFinderM001794 | NAK (from iTAK) vacuolar_proton-transporting_V-type_ATPase,_V0_domain proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, Phagosome Oxidative_phosphorylation hydrogen ion transmembrane transporter activity, calcium ion transport, myosin complex, calcium:proton_antiporter_activity motor activity, cation transmembrane transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 176 | 385 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.