PH01000141G0030's details annotation
1.Annotation
ICBR annotation: methyltransferase, putative, expressed
Blast result AT5G64030 : 0.00E+00
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01000141
Strand: -
| Region | Start | End |
| gene | 11616 | 19080 |
| mRNA | 11616 | 19080 |
| exon | 11616 | 12532 |
| exon | 13665 | 13859 |
| exon | 14331 | 14603 |
| exon | 14688 | 14862 |
| exon | 15359 | 15469 |
| exon | 15550 | 15820 |
| exon | 17651 | 17800 |
| exon | 17898 | 19080 |
| CDS | 12316 | 12532 |
| CDS | 13665 | 13859 |
| CDS | 14331 | 14603 |
| CDS | 14688 | 14862 |
| CDS | 15359 | 15469 |
| CDS | 15550 | 15820 |
| CDS | 17651 | 17800 |
| CDS | 17898 | 18941 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001503 | methyltransferase activity, DNA metabolic process, nuclease activity, MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) cell redox homeostasis, Nucleotide_excision_repair |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03141.15 | Methyltransf_29 | 294 | 798 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008168 | methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.