PH01000143G0910's details annotation
1.Annotation
ICBR annotation: 1,3-beta-glucan synthase component domain containing protein, expressed
Blast result AT3G07160 : 2.80E-58
Blast annotation: glucan synthase-like 10
2.Location
Scaffold: PH01000143
Strand: -
| Region | Start | End |
| gene | 579177 | 584621 |
| mRNA | 579177 | 584621 |
| exon | 579177 | 579582 |
| exon | 579732 | 579933 |
| exon | 580589 | 580709 |
| exon | 580814 | 580974 |
| exon | 581080 | 581161 |
| exon | 581250 | 581344 |
| exon | 582444 | 582525 |
| exon | 582626 | 582630 |
| exon | 583086 | 583172 |
| exon | 584094 | 584621 |
| CDS | 579380 | 579582 |
| CDS | 579732 | 579933 |
| CDS | 580589 | 580709 |
| CDS | 580814 | 580974 |
| CDS | 581080 | 581161 |
| CDS | 581250 | 581344 |
| CDS | 582444 | 582525 |
| CDS | 582626 | 582630 |
| CDS | 583086 | 583172 |
| CDS | 584094 | 584159 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001643 | protein targeting, protein import, GT31 GlycosylTransferases Protein_export |
| coexpression network | CFinderM001712 | mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), Aminoacyl-tRNA_biosynthesis ATP_catabolic_process valyl-tRNA aminoacylation, ATP biosynthetic process, ATP metabolic process, G-protein coupled receptor signaling pathway, G-protein_beta/gamma-subunit_complex_binding guanyl nucleotide binding, valine-tRNA ligase activity, aminoacyl-tRNA_editing_activity proton transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.