Annotation of co-expression genes

PH01000145G0570's details annotation

1.Annotation

ICBR annotation: cleavage and polyadenylation specificity factor, putative, expressed

Blast result AT3G55200 : 0.00E+00
Blast annotation: Cleavage and polyadenylation specificity factor (CPSF) A subunit protein

2.Location

Scaffold: PH01000145
Strand: -

RegionStartEnd
gene380590389848
mRNA380590389848
exon380590381508
exon382143382634
exon383108385113
exon385180385579
exon386960389848
CDS381371381508
CDS382143382634
CDS383108385113
CDS385180385579
CDS386960387106

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000765protein import into nucleus,
nucleus,
nucleobase-containing compound metabolic process,
bZIP Transcription_Regulator(from PlantTFDB)
Spliceosome

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF10433.8MMS1_N64431
PF03178.14CPSF_A7071026

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Spliceosomesplicing factor 3B subunit 3ko03041K12830

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0005515protein binding
GO:0005634nucleus

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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