PH01000148G0350's details annotation
1.Annotation
ICBR annotation: arginyl-tRNA--protein transferase 1, putative, expressed
Blast result AT3G11240 : 4.00E-116
Blast annotation: arginine-tRNA protein transferase 2
2.Location
Scaffold: PH01000148
Strand: +
| Region | Start | End |
| gene | 238240 | 241082 |
| mRNA | 238240 | 241082 |
| exon | 238240 | 238723 |
| exon | 238822 | 239976 |
| exon | 240681 | 241082 |
| CDS | 238626 | 238723 |
| CDS | 238822 | 239976 |
| CDS | 240681 | 240900 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000333 | protein arginylation, RNA_polymerase_complex arginyltransferase activity, transcription, DNA-dependent, DNA-directed RNA polymerase activity, |
| coexpression network | CFinderM000360 | protein arginylation, arginyltransferase activity, RNA_degradation MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000680 | protein arginylation, mitochondrial matrix, arginyltransferase activity, RNA methyltransferase activity, RNA processing, |
| coexpression network | CFinderM000681 | protein arginylation, GH47 Glycoside_Hydrolases arginyltransferase activity, mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis |
| coexpression network | CFinderM001063 | CMGC_CDK-CDK8 (from iTAK) protein arginylation, arginyltransferase activity, RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04376.12 | ATE_N | 1 | 24 |
| PF04377.14 | ATE_C | 272 | 413 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004057 | arginyltransferase activity |
| GO:0016598 | protein arginylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.