Annotation of co-expression genes

PH01000148G1100's details annotation

1.Annotation

ICBR annotation: tubulin/FtsZ domain containing protein, putative, expressed

Blast result AT2G36250 : 1.00E-152
Blast annotation: Tubulin/FtsZ family protein

2.Location

Scaffold: PH01000148
Strand: +

RegionStartEnd
gene774819778952
mRNA774819778952
exon774819776154
exon776402776701
exon777308777398
exon777698777822
exon778130778222
exon778423778488
exon778551778952
CDS775531776154
CDS776402776701
CDS777308777398
CDS777698777822
CDS778130778222
CDS778423778488
CDS778551778703

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000788Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
cytoplasm,
protein complex,
aromatic amino acid family biosynthetic process,
response to hormone stimulus,
protein polymerization,
Plant_hormone_signal_transduction

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00091.24Tubulin117278
PF12327.7FtsZ_C328422

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003924GTPase activity
GO:0005525GTP binding
GO:0005737cytoplasm
GO:0006184GTP catabolic process
GO:0043234protein complex
GO:0051258protein polymerization

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.