|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis | 0.001125158 | KEGG | | 3-dehydroquinate synthase activity, | 0.008562366 | GO:0003856 | | B3-ARF Transcription_Regulator(from iTAK) | 0.010099556 | GFam | | ARF Transcription_Regulator(from PlantTFDB) | 0.010099556 | GFam | | cytoplasm, | 0.011600297 | GO:0005737 | | protein complex, | 0.018515853 | GO:0043234 | | aromatic amino acid family biosynthetic process, | 0.032081283 | GO:0009073 | | response to hormone stimulus, | 0.032714863 | GO:0009725 | | protein polymerization, | 0.032714863 | GO:0051258 | | Plant_hormone_signal_transduction | 0.043905446 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000106G1400 | DHHC-type zinc finger family protein | AT1G69420 (2.30E-64) | | PH01000148G1100 | Tubulin/FtsZ family protein | AT2G36250 (1.00E-152) | | PH01000334G0560 | Protein of unknown function (DUF630 and DUF632) | AT5G25590 (2.00E-158) | | PH01001083G0430 | forkhead-associated (FHA) domain-containing protein | AT1G34355 (1.90E-33) | | PH01003096G0200 | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related | AT1G19850 (8.00E-175) | | PH01006031G0060 | 3-dehydroquinate synthase, putative | AT5G66120 (1.00E-170) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000363 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
| details | | CFinderM000527 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
regulation_of_cell_cycle
aromatic amino acid family biosynthetic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
| details | | CFinderM000638 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
B3 Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
Others Transcription_Regulator(from iTAK)
| details | | CFinderM000939 | microtubule-based movement,
microtubule associated complex,
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
microtubule motor activity,
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
minus-end-directed_microtubule_motor_activity
RNA_degradation
| details | | CFinderM000998 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lysine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
histone_methylation
histone_lysine_methylation
aromatic amino acid family biosynthetic process,
SET Transcription_Regulator(from iTAK)
| details | | CFinderM001002 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
cytokinesis
microtubule cytoskeleton organization,
3-dehydroquinate synthase activity,
| details | | CFinderM001003 | Endocytosis
STE_STE11 (from iTAK)
| details | | CFinderM001059 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
SNARE_interactions_in_vesicular_transport
Golgi vesicle transport,
aromatic amino acid family biosynthetic process,
phosphatidylinositol metabolic process,
RNA_degradation
| details | | CFinderM001179 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
| details | | CFinderM001205 | ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
Drug_metabolism_-_cytochrome_P450
Metabolism_of_xenobiotics_by_cytochrome_P450
Glutathione_metabolism
| details | | CFinderM001399 | RNA_transport
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
Base_excision_repair
| details | | CFinderM001400 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
ribonuclease H activity,
DNA photolyase activity,
cytokinesis
aromatic amino acid family biosynthetic process,
microtubule cytoskeleton organization,
RNA metabolic process,
DNA_replication
microtubule binding,
ubiquitin ligase complex,
Ubiquitin_mediated_proteolysis
protein ubiquitination,
DNA repair,
| details | | CFinderM001756 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lipoic_acid_metabolism
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
aromatic amino acid family biosynthetic process,
lipoate biosynthetic process,
lipoate synthase activity,
3-dehydroquinate synthase activity,
| details |
4.Expression profilings |
