CFinderM000638's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis0.000375053KEGG
aromatic amino acid family biosynthetic process,0.008430118GO:0009073
3-dehydroquinate synthase activity,0.008562366GO:0003856
B3 Transcription_Regulator(from PlantTFDB)0.024167328GFam
SNF2 Transcription_Regulator(from iTAK)0.025430857GFam
Others Transcription_Regulator(from iTAK)0.030292622GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000025G0470AP2/B3-like transcriptional factor family proteinAT4G33280 (1.30E-26)
PH01000258G0510BRCT domain-containing DNA repair proteinAT3G21480 (1.90E-94)
PH01000385G0640-AT5G02520 (2.90E-15)
PH01000634G0180chromatin remodeling 1AT5G66750 (0.00E+00)
PH01003739G0070shortage in chiasmata 1AT5G52290 (3.00E-101)
PH01006031G00603-dehydroquinate synthase, putativeAT5G66120 (1.00E-170)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000269details
CFinderM000271B3 Transcription_Regulator(from PlantTFDB)
details
CFinderM000363Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
details
CFinderM000527Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
regulation_of_cell_cycle
aromatic amino acid family biosynthetic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
details
CFinderM000536SET Transcription_Regulator(from iTAK)
Others Transcription_Regulator(from iTAK)
details
CFinderM000573fatty-acyl-CoA binding,
Others Transcription_Regulator(from iTAK)
signal transduction,
details
CFinderM000574Others Transcription_Regulator(from iTAK)
signal transduction,
details
CFinderM000788Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
cytoplasm,
protein complex,
aromatic amino acid family biosynthetic process,
response to hormone stimulus,
protein polymerization,
Plant_hormone_signal_transduction
details
CFinderM000939microtubule-based movement,
microtubule associated complex,
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
microtubule motor activity,
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
minus-end-directed_microtubule_motor_activity
RNA_degradation
details
CFinderM000998Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lysine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
histone_methylation
histone_lysine_methylation
aromatic amino acid family biosynthetic process,
SET Transcription_Regulator(from iTAK)
details
CFinderM001002Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
cytokinesis
microtubule cytoskeleton organization,
3-dehydroquinate synthase activity,
details
CFinderM001059Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
SNARE_interactions_in_vesicular_transport
Golgi vesicle transport,
aromatic amino acid family biosynthetic process,
phosphatidylinositol metabolic process,
RNA_degradation
details
CFinderM001179Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
details
CFinderM001399RNA_transport
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
Base_excision_repair
details
CFinderM001400Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
ribonuclease H activity,
DNA photolyase activity,
cytokinesis
aromatic amino acid family biosynthetic process,
microtubule cytoskeleton organization,
RNA metabolic process,
DNA_replication
microtubule binding,
ubiquitin ligase complex,
Ubiquitin_mediated_proteolysis
protein ubiquitination,
DNA repair,
details
CFinderM001592DNA_ligation_involved_in_DNA_repair
DNA_ligase_activity
DNA ligase (ATP) activity,
regulation_of_cell_cycle
DNA recombination,
C3H Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
HB-BELL Transcription_Regulator(from iTAK)
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
Mismatch_repair
Base_excision_repair
Nucleotide_excision_repair
DNA_replication
DNA binding,
details
CFinderM001756Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lipoic_acid_metabolism
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
aromatic amino acid family biosynthetic process,
lipoate biosynthetic process,
lipoate synthase activity,
3-dehydroquinate synthase activity,
details

4.Expression profilings