CFinderM001059's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis0.002750129KEGG
3-dehydroquinate synthase activity,0.01814688GO:0003856
SNARE_interactions_in_vesicular_transport0.020562895KEGG
Golgi vesicle transport,0.021376832GO:0048193
aromatic amino acid family biosynthetic process,0.021376832GO:0009073
phosphatidylinositol metabolic process,0.027510208GO:0046488
RNA_degradation0.049379737KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000017G0420tobamovirus multiplication protein 3AT2G02180 (6.00E-100)
PH01000334G0560Protein of unknown function (DUF630 and DUF632)AT5G25590 (2.00E-158)
PH01001022G0480mechanosensitive channel of small conductance-like 10AT5G12080 (1.00E-115)
PH01001621G032026S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domainAT3G61140 (8.40E-88)
PH01001811G0140phosphatidylinositol-4-phosphate 5-kinase 2AT1G77740 (4.00E-102)
PH01003872G0040non-intrinsic ABC protein 9AT5G02270 (2.00E-117)
PH01006031G00603-dehydroquinate synthase, putativeAT5G66120 (1.00E-170)
PH01006766G0010syntaxin of plants 61AT1G28490 (9.10E-61)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000363Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
details
CFinderM000527Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
regulation_of_cell_cycle
aromatic amino acid family biosynthetic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
details
CFinderM000638Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
B3 Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
Others Transcription_Regulator(from iTAK)
details
CFinderM000788Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
cytoplasm,
protein complex,
aromatic amino acid family biosynthetic process,
response to hormone stimulus,
protein polymerization,
Plant_hormone_signal_transduction
details
CFinderM000939microtubule-based movement,
microtubule associated complex,
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
microtubule motor activity,
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
minus-end-directed_microtubule_motor_activity
RNA_degradation
details
CFinderM000998Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lysine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
histone_methylation
histone_lysine_methylation
aromatic amino acid family biosynthetic process,
SET Transcription_Regulator(from iTAK)
details
CFinderM001002Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
cytokinesis
microtubule cytoskeleton organization,
3-dehydroquinate synthase activity,
details
CFinderM001003Endocytosis
STE_STE11 (from iTAK)
details
CFinderM001060response to hormone stimulus,
RLK-Pelle_URK-1 (from iTAK)
galactose metabolic process,
nucleus,
UDP-glucose 4-epimerase activity,
protein dimerization activity,
details
CFinderM001166DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
details
CFinderM001179Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
details
CFinderM001205ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
Drug_metabolism_-_cytochrome_P450
Metabolism_of_xenobiotics_by_cytochrome_P450
Glutathione_metabolism
details
CFinderM001299SNARE_interactions_in_vesicular_transport
Golgi vesicle transport,
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001383Metabolism_of_xenobiotics_by_cytochrome_P450
Drug_metabolism_-_cytochrome_P450
Glutathione_metabolism
protein transport,
small GTPase mediated signal transduction,
details
CFinderM001384protein transport,
details
CFinderM001399RNA_transport
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
Base_excision_repair
details
CFinderM001400Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
ribonuclease H activity,
DNA photolyase activity,
cytokinesis
aromatic amino acid family biosynthetic process,
microtubule cytoskeleton organization,
RNA metabolic process,
DNA_replication
microtubule binding,
ubiquitin ligase complex,
Ubiquitin_mediated_proteolysis
protein ubiquitination,
DNA repair,
details
CFinderM001556RNA_transport
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001756Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lipoic_acid_metabolism
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
aromatic amino acid family biosynthetic process,
lipoate biosynthetic process,
lipoate synthase activity,
3-dehydroquinate synthase activity,
details
CFinderM001854HSF Transcription_Regulator(from PlantTFDB)
fatty-acyl-CoA binding,
details

4.Expression profilings