PH01003872G0040's details annotation
1.Annotation
ICBR annotation: ABC transporter, ATP-binding protein, putative, expressed
Blast result AT5G02270 : 2.00E-117
Blast annotation: non-intrinsic ABC protein 9
2.Location
Scaffold: PH01003872
Strand: +
| Region | Start | End |
| gene | 33869 | 37457 |
| mRNA | 33869 | 37457 |
| exon | 33869 | 34495 |
| exon | 34606 | 34739 |
| exon | 34877 | 34909 |
| exon | 35389 | 35475 |
| exon | 36589 | 36684 |
| exon | 36795 | 36947 |
| exon | 37022 | 37099 |
| exon | 37135 | 37457 |
| CDS | 34345 | 34495 |
| CDS | 34606 | 34739 |
| CDS | 34877 | 34909 |
| CDS | 35389 | 35475 |
| CDS | 36589 | 36684 |
| CDS | 36795 | 36947 |
| CDS | 37022 | 37099 |
| CDS | 37135 | 37425 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000939 | microtubule-based movement, microtubule associated complex, Phenylalanine,_tyrosine_and_tryptophan_biosynthesis microtubule motor activity, aromatic amino acid family biosynthetic process, 3-dehydroquinate synthase activity, minus-end-directed_microtubule_motor_activity RNA_degradation |
| coexpression network | CFinderM001059 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, SNARE_interactions_in_vesicular_transport Golgi vesicle transport, aromatic amino acid family biosynthetic process, phosphatidylinositol metabolic process, RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00005.26 | ABC_tran | 30 | 175 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | CCR4-NOT complex subunit CAF16 | ko03018 | K12608 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0005524 | ATP binding |
| GO:0016887 | ATPase activity |
| GO:0017111 | nucleoside-triphosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.